Smit ME, McGregor SR, Sun H, Gough C, Bågman AM, Soyars CL, Kroon JT, Gaudinier A, Williams CJ, Yang X, Nimchuk ZL, Weijers D, Turner SR, Brady SM^, Etchells JP^. ^=co-corresponding author (2020) A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. The Plant Cell.

Gray SB, Rodriguez-Medina J, Rusoff S, Toal TW, Kajala K, Runcie DE, Brady SM. (2020) Translational regulation contributes to the elevated CO₂ response in two Solanum species.. The Plant Journal.

Reynoso MA*, Kajala K*, Bajic M*, West DA*, Pauluzzi G*, Yao AI, Hatch K, Zumstein K, Woodhouse M, Rodriguez-Medina,  Sinha N^, Brady SM^, Deal RB^, Bailey-Serres J^. *=co-first author; ^=co-corresponding author. (2019) Evolutionary. flexibility in flooding response circuitry in angiosperms. Science. [Science]

Shulse CN, Cole BJ, Ciobanu D, Lin J, Yoshinaga Y, Gouran M, Turco GM, Zhu Y, O’Malley RC, Brady SM, Dickel DE (2019) High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types. Cell Reports. [PubMed]

Turco GM, Rodriguez-Medina J, Siebert S, Han D, Valderrama-Gómez MÁ, Vahldick H, Shulse CN, Cole BJ, Juliano CE, Dickel DE, Savageau MA, Brady SM. (2019) Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation. Cell Reports. [PubMed]

Gaudinier A, Rodriguez-Medina J, Zhang L, Olson A, Liseron-Monfils C, Bågman AM, Foret J, Abbitt S, Tang M, Li B, Runcie DE, Kliebenstein DJ, Shen B, Frank MJ, Ware D, Brady SM. (2018) Transcriptional regulation of nitrogen-associated metabolism and growth.  Nature. [PubMed]

Toal TW, Ron M, Gibson D, Kajala K, Splitt B, Johnson LS, Miller ND, Slovak R, Gaudinier A, Patel R, de Lucas M, Provart NJ, Spalding EP, Busch W, Kliebenstein DJ, Brady SM. (2018) Regulation of Root Angle and Gravitropism. G3.  [PubMed]

Maher KA, Bajic M, Kajala K, Reynoso M, Pauluzzi G, West DA, Zumstein K, Woodhouse M, Bubb K, Dorrity M, Queitsch C, Bailey-Serres, Sinha N, Brady SM, Deal RB. (2017) Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules. Plant Cell.  [PubMed]

Reynoso MA, Pauluzzi GC, Kajala K, Cabanlit C, Velasco J, Bzin J, Deal R, Sinha NR, Brady SM, Bailey-Serres J. (2017) Nuclear transcriptomes at high resolution using retooled INTACT.   Plant Physiology.  [PubMed]

 De Lucas M, Pu L, Turco G, Gaudinier A, Morao AK, Harashima H, Kim D, Ron M, Sugimoto K, Roudier F, Brady SM. (2016) Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell. [PubMed]

Sparks EE, Drapek C, Gaudinier A, Li S, Ansariola M, Shen N, Hennacy JH, Zhang J, Turco G, Petricka JJ, Foret J, Hartemink AJ, Gordân R, Megraw M, Brady SM, Benfey PN. (2016) Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Developmental Cell. [PubMed]

Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Corwin J, Tsoukalas N, Pauly M, Kliebenstein DJ, Tagkopulos I, Breton G, Pruneda-Paz JL, Ahnert SE, Kay SA, Hazen SP, Brady SM. (2015) Environmental, Developmental and Genotype-Dependent Regulation of Xylem Cell Specification and Secondary Cell Wall Biosynthesis in Arabidopsis thaliana. Nature. [PubMed]

Ron M, Kajala K, Pauluzzi G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal RB, Bailey-Serres J, Brady SM. (2014) Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model. Plant Physiology. [PubMed]

Li B, Gaudinier A, Tang M, Taylor-Teeples M, Nham NT, Ghaffari C, Benson DS, Steinmann M, Gray JA, Brady SM, Kliebenstein DJ. (2014) Promoter-Based Integration in Plant Defense Regulation. Plant Physiology.  [PubMed]

Ron M, Dorrity M, de Lucas M, Toal T, Hernandez RI, Little SA, Maloof JN, Kliebenstein DJ, Brady SM.  (2013) Identification of Novel Loci Regulating Inter-specific Variation in Root Morphology and Cellular Development in Tomato.  Plant Physiology.  [PubMed]

Moussaief A, Rogachev I, Brodsky L, Malitsky S, Toal TW, Belcher H, Yativ M, Brady SM, Benfey PN, Aharoni A.  (2013)  High-resolution metabolic mapping of cell types in plant roots.  PNAS.  [PubMed]

Gaudinier A, Zhang L, Reece-Hoyes JS, Taylor-Teeples M, Pu L, Liu Z, Breton G, Pruneda- Paz JL, Kim D, Kay SA, Walhout AJM, Ware D, Brady SM. (2011)  Enhanced Y1H assays to elucidate Arabidopsis gene regulatory networks. Nature Methods. [PubMed]

Brady SM, Orlando DA, Lee JY, Wang, JY, Koch D, Dinneny JR, Mace D, Ohler U, Benfey PN.  (2007) Dominant Root Expression Patterns Revealed in a High-Resolution Spatiotemporal
Expression Map.  Science.  [PubMed]